See here for updates: https://bsky.app/profile/matrix.org/post/3lxuslbzjuc2t

That's actually pretty much what Andrej Karpathy mentions as a mitigation for hallucinations here:

https://m.youtube.com/watch?v=7xTGNNLPyMI&t=5400s

Spanish National Cancer Research Centre (CNIO) | Madrid, Spain | HYBRID (2d/week on-site) | HPC Engineer | Full-time

We're looking for an HPC engineer to join us at the Bioinformatics Unit to help us boost the scientific computing infrastructure at our research centre.

What you'll do:

• Administer & grow our HPC cluster (Slurm)

• Help implement our new storage system (Ceph)

• Optional: write tools and/or co-author research papers

Apply: https://www.cnio.es/empleo/advanced-degree-for-the-bioinform...

Questions: tdidomenico@

Having a 3D printer available, I've been using these two projects to set up my modest workshop and it's worked out great.

https://github.com/jeffbarr/gridfinity-catalog

https://github.com/aderusha/DDD-Printable-Wall-Control-Syste...

Very much so. As a bioinformatician, for me conda has become a central part of my workflow as a generic package manager through the conda-forge and bioconda channels. I know a few university HPC clusters that use it to handle software instead of e.g. environment modules.

I sync my journal directory using syncthing and it works reasonably well.

I had the opposite experience with Syncthing + Logseq. The way Logseq is designed, refreshing the entire graph is a must before you even consider editing your pages in another device. I forgot to do it once and after some time editing my pages, I realized that I lost a good chunk of my notes from several days back.

This is used in both bwa [1] and bowtie [2], two of the most popular DNA sequence aligners.

[1] https://github.com/lh3/bwa

[2] https://github.com/BenLangmead/bowtie

The full text search idea is also called the FM Index:

https://en.wikipedia.org/wiki/FM-index

The BWT is one of those almost magical tools for compression. But using it for speedy string search is a whole other amazing invention too.

Also bzip2! Which is just data compression, not sequence alignment.

I would easily expect even worse than that any day during peak hour in any of the larger stations here in Madrid.